nf-core/agat/spaddintrons @ 0.0.0-0c7146d
Summary
Add intron features to gtf/gff file without intron features.
Get started
Add the following snippet to your workflow script to include this module.
include { AGAT_SPADDINTRONS } from 'nf-core/agat/spaddintrons'
License
MIT License
Process
Name
|
AGAT_SPADDINTRONS |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gff
file
|
Input gtf/gff file *.{gff,gff3,gtf}
|
config
file
|
Optional input agat config file *.{yaml,yml}
|
|---|
Output
2 channels
#1
gff
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
${output}
file
|
Output gff3 file with introns *.gff
|
#2
versions_agat
tuple
${task.process}
string
|
The name of the process |
|---|---|
agat
string
|
The name of the tool |
agat --version | sed 's/v//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| agat | Another Gff Analysis Toolkit (AGAT). Suite of tools to handle gene annotations in any GTF/GFF format. | https://agat.readthedocs.io/en/latest/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:21:15 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fagat%2Fspaddintrons/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/agat/spaddintrons/blobs/sha256:8956ea057ddf65a57f74d7a1e73705b2b78164dc46f91f72ae1789535412e61d |
| Size | 2.2 KB |
| Checksum | sha256:8956ea057ddf65a57f74d7a1e73705b2b78164dc46f91f72ae1789535412e61d |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:21:15 (UTC) | 1 | 2.2 KB | - |