nf-core/agat/convertbed2gff @ 0.0.0-0c7146d
Summary
Takes a bed12 file and converts to a GFF3 file
Get started
Add the following snippet to your workflow script to include this module.
include { AGAT_CONVERTBED2GFF } from 'nf-core/agat/convertbed2gff'
License
MIT License
Process
Name
|
AGAT_CONVERTBED2GFF |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
bed
file
|
Input bed12 file *.bed
|
Output
2 channels
#1
gff
tuple
meta
map
|
Groovy Map containing sample information |
|---|---|
*.gff
file
|
Output GFF3 file *.{gff}
|
#2
versions_agat
tuple
${task.process}
string
|
The name of the process |
|---|---|
agat
string
|
The name of the tool |
agat --version | sed 's/v//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| agat | AGAT is a toolkit for manipulation and getting information from GFF/GTF files | https://github.com/NBISweden/AGAT |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:21:06 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fagat%2Fconvertbed2gff/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/agat/convertbed2gff/blobs/sha256:653e315195f7faf4cc7785a08c9be87635e71c2760ef999d64bc3ef1795d540d |
| Size | 2.1 KB |
| Checksum | sha256:653e315195f7faf4cc7785a08c9be87635e71c2760ef999d64bc3ef1795d540d |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:21:06 (UTC) | 1 | 2.1 KB | - |