nf-core/abricate/summary @ 0.0.0-0c7146d
Summary
Screen assemblies for antimicrobial resistance against multiple databases
Get started
Add the following snippet to your workflow script to include this module.
include { ABRICATE_SUMMARY } from 'nf-core/abricate/summary'
License
MIT License
Process
Name
|
ABRICATE_SUMMARY |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reports
file
|
FASTA, GenBank or EMBL formatted file *.{fa,fasta,fna,fa.gz,fasta.gz,fna.gz,gbk,gbk.gz,embl,embl.gz}
|
Output
2 channels
#1
report
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
Tab-delimited report of aggregated results *.{txt}
|
#2
versions_abricate_summary
tuple
${task.process}
string
|
The name of the process |
|---|---|
abricate
string
|
The name of the tool |
abricate --version 2>&1 | sed 's/^.*abricate //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| abricate | Mass screening of contigs for antibiotic resistance genes | https://github.com/tseemann/abricate |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:20:53 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fabricate%2Fsummary/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/abricate/summary/blobs/sha256:72caa79210f34adbdbe9d471e1e1cb6774105902715915c78df720a4968ee62f |
| Size | 2.3 KB |
| Checksum | sha256:72caa79210f34adbdbe9d471e1e1cb6774105902715915c78df720a4968ee62f |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:20:53 (UTC) | 1 | 2.3 KB | - |